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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFR44_05010PTS ascorbate transporter subunit IIC; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)    
Predicted Functional Partners:
ODJ60391.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
ODJ60389.1
PTS ascorbate transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.986
ODJ60397.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.975
ODJ60390.1
PTS maltose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.968
ptsH
Phosphocarrier protein HPr; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.905
ODJ60395.1
Carbohydrate degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.538
ODJ58608.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.499
ODJ58655.1
PTS fructose transporter subunit IIABC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.463
ODJ58277.1
PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.463
ODJ60398.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.434
Your Current Organism:
Brochothrix thermosphacta
NCBI taxonomy Id: 2756
Other names: ATCC 11509, B. thermosphacta, CCUG 35132, CIP 103251, DSM 20171, IFO 12167, JCM 20628, LMG 17208, LMG:17208, Microbacterium thermosphactum, NBRC 12167, NCIB 10018, NCIB:10018, NCTC 10822
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