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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODJ58786.1DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)    
Predicted Functional Partners:
ODJ58785.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.992
ODJ60035.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.972
ODJ58784.1
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.920
ODJ57731.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.893
ODJ59789.1
D-ribose ABC transporter substrate-binding protein; Periplasmic substrate-binding component of the ATP-dependent ribose transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.884
ODJ58783.1
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
     0.838
ODJ58782.1
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.829
ODJ58744.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.610
ODJ60212.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.609
ODJ57687.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.587
Your Current Organism:
Brochothrix thermosphacta
NCBI taxonomy Id: 2756
Other names: ATCC 11509, B. thermosphacta, CCUG 35132, CIP 103251, DSM 20171, IFO 12167, JCM 20628, LMG 17208, LMG:17208, Microbacterium thermosphactum, NBRC 12167, NCIB 10018, NCIB:10018, NCTC 10822
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