KGQ22503.2 protein (Thermus filiformis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KGQ22503.2

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)

Predicted Functional Partners:

KIX84790.1

0.984

KGQ22506.1

0.970

KGQ23005.2

0.941

KGQ23002.1

0.898

KGQ22960.1

0.873

KGQ22504.1

0.773

KGQ22505.2

0.773

KGQ22508.1

0.762

KGQ22502.1

0.762

KGQ21959.1

0.735

Your Current Organism:

Thermus filiformis

NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGQ21959.1	KGQ22503.2	THFILI_04785	THFILI_01110	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
KGQ21959.1	KGQ22960.1	THFILI_04785	THFILI_07670	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.994
KGQ21959.1	KGQ23005.2	THFILI_04785	THFILI_11180	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
KGQ21959.1	KIX84790.1	THFILI_04785	THFILI_01120	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
KGQ22502.1	KGQ22503.2	THFILI_01095	THFILI_01110	D-galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
KGQ22502.1	KGQ22504.1	THFILI_01095	THFILI_01100	D-galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.787
KGQ22502.1	KGQ22505.2	THFILI_01095	THFILI_01105	D-galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	0.923
KGQ22502.1	KGQ22506.1	THFILI_01095	THFILI_01115	D-galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
KGQ22502.1	KGQ22508.1	THFILI_01095	THFILI_01090	D-galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
KGQ22502.1	KIX84790.1	THFILI_01095	THFILI_01120	D-galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
KGQ22503.2	KGQ21959.1	THFILI_01110	THFILI_04785	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
KGQ22503.2	KGQ22502.1	THFILI_01110	THFILI_01095	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
KGQ22503.2	KGQ22504.1	THFILI_01110	THFILI_01100	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.773
KGQ22503.2	KGQ22505.2	THFILI_01110	THFILI_01105	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	0.773
KGQ22503.2	KGQ22506.1	THFILI_01110	THFILI_01115	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
KGQ22503.2	KGQ22508.1	THFILI_01110	THFILI_01090	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
KGQ22503.2	KGQ22960.1	THFILI_01110	THFILI_07670	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.873
KGQ22503.2	KGQ23002.1	THFILI_01110	THFILI_11185	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
KGQ22503.2	KGQ23005.2	THFILI_01110	THFILI_11180	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
KGQ22503.2	KIX84790.1	THFILI_01110	THFILI_01120	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984