KGQ21033.1 protein (Thermus filiformis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KGQ21033.1

Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)

Predicted Functional Partners:

ribBA

0.685

KIX84779.1

0.575

KGQ21031.1

0.524

KGQ21032.1

0.493

KGQ22973.2

0.475

Your Current Organism:

Thermus filiformis

NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGQ21031.1	KGQ21032.1	THFILI_01455	THFILI_01460	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KGQ21031.1	KGQ21033.1	THFILI_01455	THFILI_01450	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
KGQ21031.1	KIX84779.1	THFILI_01455	THFILI_01445	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
KGQ21032.1	KGQ21031.1	THFILI_01460	THFILI_01455	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.991
KGQ21032.1	KGQ21033.1	THFILI_01460	THFILI_01450	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
KGQ21032.1	KIX84779.1	THFILI_01460	THFILI_01445	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KGQ21033.1	KGQ21031.1	THFILI_01450	THFILI_01455	Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.524
KGQ21033.1	KGQ21032.1	THFILI_01450	THFILI_01460	Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology.	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
KGQ21033.1	KGQ22973.2	THFILI_01450	THFILI_01795	Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
KGQ21033.1	KIX84779.1	THFILI_01450	THFILI_01445	Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
KGQ21033.1	ribBA	THFILI_01450	THFILI_00835	Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology.	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.685
KGQ22973.2	KGQ21033.1	THFILI_01795	THFILI_01450	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
KGQ22973.2	ribBA	THFILI_01795	THFILI_00835	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.924
KIX84779.1	KGQ21031.1	THFILI_01445	THFILI_01455	Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.429
KIX84779.1	KGQ21032.1	THFILI_01445	THFILI_01460	Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KIX84779.1	KGQ21033.1	THFILI_01445	THFILI_01450	Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
ribBA	KGQ21033.1	THFILI_00835	THFILI_01450	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	Cell wall anchor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
ribBA	KGQ22973.2	THFILI_00835	THFILI_01795	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924