Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KGQ22973.2Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (841 aa)    
Predicted Functional Partners:
KGQ22458.2
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.991
KIX84454.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.971
KGQ20963.2
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.969
KGQ21640.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.938
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 0.924
KGQ22181.2
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.916
KGQ21038.2
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.911
KGQ21235.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.902
KGQ21026.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.902
KGQ23022.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.894
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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