Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KGQ22045.2Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)    
Predicted Functional Partners:
KGQ22043.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.814
KIX84767.1
Conserved repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.625
KGQ22293.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.623
KGQ21503.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
KGQ21611.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.508
KGQ20880.2
Stage II sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.466
KGQ22749.2
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.456
KGQ22227.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.450
KIX84746.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.430
KGQ22413.2
CRISPR-associated protein Csm5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.407
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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