Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGQ21216.2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)    
Predicted Functional Partners:
KGQ22137.2
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.803
KGQ21220.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.741
KGQ22175.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.698
KIX84833.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.652
KGQ23047.2
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.652
KGQ22174.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.652
KGQ21219.1
Sulfur reduction protein DsrE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.643
KGQ21217.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.
  
 
  0.610
KGQ22178.2
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.593
KGQ21503.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.448
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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