STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGQ21225.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)    
Predicted Functional Partners:
KGQ21228.2
anti-sigmaE protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.862
KGQ22347.2
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PlsY family.
   
 
 0.675
KGQ21419.1
Quinate 5-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.644
KGQ21226.1
RNA polymerase sigma E protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.643
KGQ22043.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
KGQ22413.2
CRISPR-associated protein Csm5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
KGQ21503.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
KGQ22656.2
Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
KGQ21113.1
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.454
KGQ23032.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.453
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.