Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KIX84755.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)    
Predicted Functional Partners:
KGQ21906.2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.982
KGQ22309.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.882
KIX84680.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.863
KGQ22532.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.862
KGQ21478.2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.859
KGQ21636.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.856
KGQ23019.2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.787
KGQ22973.2
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.769
KGQ22653.2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.758
KIX84708.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.659
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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