Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIX84660.1Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)    
Predicted Functional Partners:
KGQ22859.2
DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.894
KIX84342.1
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.812
KGQ22855.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KGQ22853.1
Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KGQ21179.1
DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.610
KGQ22864.1
ATP-dependent protease subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
       0.546
KGQ22862.2
ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
KGQ22863.2
O-linked GlcNAc transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
KGQ22856.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
KGQ22857.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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