STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcBtRNA-splicing ligase RtcB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RtcB family. (877 aa)    
Predicted Functional Partners:
KGQ21927.2
Phosphoribosylformylglycinamidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.958
KIX84603.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.633
KIX84604.1
Periplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
KGQ21001.1
Peptide chain release factor 3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.548
KGQ22660.2
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.
   
 0.524
KGQ21137.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
KGQ21138.1
Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
KGQ20943.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.410
KGQ22136.1
ATP pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TtcA family.
  
     0.409
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.