STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIX84610.1DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)    
Predicted Functional Partners:
KGQ22833.2
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.921
cobQ
Cobalamin biosynthesis protein CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
       0.773
KIX84341.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
KGQ22662.2
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.610
KGQ22721.2
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.599
KIX84593.1
Toxin HicA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
KIX84342.1
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.457
KIX84348.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.449
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.