KIX84623.1 protein (Thermus filiformis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Thermus filiformis

NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGQ22664.1	KIX84623.1	THFILI_05210	THFILI_05205	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
KGQ22665.2	KIX84623.1	THFILI_05195	THFILI_05205	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
KGQ22665.2	nth	THFILI_05195	THFILI_05200	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.	0.712
KIX84623.1	KGQ22664.1	THFILI_05205	THFILI_05210	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
KIX84623.1	KGQ22665.2	THFILI_05205	THFILI_05195	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
KIX84623.1	nth	THFILI_05205	THFILI_05200	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.	0.567
nth	KGQ22665.2	THFILI_05200	THFILI_05195	Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
nth	KIX84623.1	THFILI_05200	THFILI_05205	Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567