Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
KGQ21120.2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)    
Predicted Functional Partners:
apgM
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.752
KGQ20904.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
KGQ21445.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
KGQ21592.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
proS
proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.550
KGQ21969.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.525
KGQ22600.1
DDE endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
KGQ22977.2
DDE endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
KGQ21501.2
DDE endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
KGQ22645.2
DDE endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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