Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGQ22658.2Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)    
Predicted Functional Partners:
KGQ22657.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
KGQ21449.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.588
KGQ22402.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
KGQ22404.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
KGQ22399.2
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.468
KGQ22408.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.454
KGQ22400.1
UDP-N-acetyl-D-glucosamine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.448
KGQ23026.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.437
KIX84863.1
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.436
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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