Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIX84478.1Cytochrome C biogenesis protein CcmH; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
KGQ23021.1
Cytochrome C assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.832
KGQ23029.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.818
KGQ23014.1
Molybdopterin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.782
KGQ23033.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.780
KIX84476.1
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.721
KIX84523.1
Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.648
KIX84477.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.624
KGQ23023.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.580
KGQ23025.2
Sulfur oxidation protein SoxZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.564
KGQ23015.2
Sulfide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.562
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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