STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGQ21560.2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (800 aa)    
Predicted Functional Partners:
KIX84484.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.948
KGQ21561.2
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.924
KGQ21562.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
KIX84604.1
Periplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
KIX84485.1
Cytochrome C biogenesis protein CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KIX84372.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
KGQ22893.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.757
KIX84547.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
KGQ23121.2
DNA recombination protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.751
KGQ22632.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.