Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGQ20909.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)    
Predicted Functional Partners:
KGQ22989.2
Prepilin-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.820
KGQ21188.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.793
KGQ20891.1
Phytochrome sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.741
KGQ20911.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.598
KGQ20912.2
General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.576
KGQ22868.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.558
KGQ21049.2
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.511
KGQ23009.2
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
KGQ20907.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.426
KGQ20910.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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