Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGQ22893.2Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (585 aa)    
Predicted Functional Partners:
KGQ21560.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
KIX84604.1
Periplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.715
KGQ22413.2
CRISPR-associated protein Csm5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
KGQ21228.2
anti-sigmaE protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
KIX84547.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.637
KIX84372.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.637
KGQ21497.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.628
KGQ21370.2
CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.606
KIX84767.1
Conserved repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
KGQ21365.1
CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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