Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
KGQ22753.2ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)    
Predicted Functional Partners:
KGQ21370.2
CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.841
KIX84507.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
KIX84397.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
KGQ21375.1
CRISPR-associated protein Cmr5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.733
KGQ21321.2
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.718
KGQ22210.2
CRISPR-associated protein Cse2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.715
KGQ21365.1
CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.698
KGQ23086.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
KGQ21368.2
CRISPR-associated protein Crm2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.673
KGQ21373.2
CRISPR-associated protein Cmr3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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