Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KGQ21825.1Sodium ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)    
Predicted Functional Partners:
KGQ21826.2
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.980
KIX84518.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.643
KGQ23123.1
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.589
KGQ22747.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.552
KGQ21829.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.550
KGQ21486.2
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
KGQ21485.1
Periplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
KGQ21824.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.400
KGQ21828.2
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.400
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.400
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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