STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
menCO-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). (371 aa)    
Predicted Functional Partners:
KGQ21307.2
Chorismate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.959
KGQ21304.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.797
KGQ21301.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.789
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.778
gatC
glutamyl-tRNA amidotransferase; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.778
KGQ21305.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
KGQ21662.2
Oligosaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.727
KIX84520.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.727
KGQ21664.2
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.649
KGQ22625.2
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.643
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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