STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGQ23117.1Stage V sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)    
Predicted Functional Partners:
KGQ23116.2
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.997
KGQ23120.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.
 
  
 0.996
KGQ23122.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.626
KGQ23124.2
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.574
KGQ23123.1
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
KGQ23110.2
Stage V sporulation protein S; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.483
KGQ22346.2
FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.459
recX
Recombinase RecX; Modulates RecA activity; Belongs to the RecX family.
       0.427
KGQ23106.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.419
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.