Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KGQ22000.1Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1096 aa)    
Predicted Functional Partners:
KGQ22002.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
KGQ22006.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.981
KGQ22003.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.930
KGQ22138.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.869
KGQ22961.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.784
secF
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.777
KGQ22005.1
Gamma-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KGQ22004.1
Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KGQ22140.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.707
KGQ21392.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.677
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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