Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KGQ22653.2Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (968 aa)    
Predicted Functional Partners:
KIX84564.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.961
KGQ21978.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.834
KIX84339.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.818
KGQ21643.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.815
KIX84483.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.812
KGQ21469.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.783
KIX84755.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.758
KIX84641.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.748
KIX84862.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
KGQ20968.2
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.710
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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