KGQ22476.2 protein (Thermus filiformis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KGQ22476.2

DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)

Predicted Functional Partners:

KIX84566.1

0.773

KGQ22647.1

0.754

KGQ22652.2

0.712

KIX84759.1

0.649

KIX84758.1

0.627

KGQ21217.1

0.519

KGQ21691.1

0.519

KGQ22072.2

0.486

KGQ22648.1

0.468

KGQ22626.2

0.412

Your Current Organism:

Thermus filiformis

NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGQ21217.1	KGQ21691.1	THFILI_01965	THFILI_08135	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	0.559
KGQ21217.1	KGQ22476.2	THFILI_01965	THFILI_08280	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
KGQ21217.1	KIX84758.1	THFILI_01965	THFILI_02340	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
KGQ21217.1	KIX84759.1	THFILI_01965	THFILI_02345	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
KGQ21691.1	KGQ21217.1	THFILI_08135	THFILI_01965	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	0.559
KGQ21691.1	KGQ22476.2	THFILI_08135	THFILI_08280	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
KGQ21691.1	KIX84758.1	THFILI_08135	THFILI_02340	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
KGQ21691.1	KIX84759.1	THFILI_08135	THFILI_02345	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
KGQ22072.2	KGQ22476.2	THFILI_07810	THFILI_08280	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
KGQ22072.2	KIX84759.1	THFILI_07810	THFILI_02345	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
KGQ22476.2	KGQ21217.1	THFILI_08280	THFILI_01965	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	0.519
KGQ22476.2	KGQ21691.1	THFILI_08280	THFILI_08135	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	0.519
KGQ22476.2	KGQ22072.2	THFILI_08280	THFILI_07810	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
KGQ22476.2	KGQ22626.2	THFILI_08280	THFILI_04575	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.412
KGQ22476.2	KGQ22647.1	THFILI_08280	THFILI_08270	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.	0.754
KGQ22476.2	KGQ22648.1	THFILI_08280	THFILI_08260	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
KGQ22476.2	KGQ22652.2	THFILI_08280	THFILI_08265	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
KGQ22476.2	KIX84566.1	THFILI_08280	THFILI_08275	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KGQ22476.2	KIX84758.1	THFILI_08280	THFILI_02340	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
KGQ22476.2	KIX84759.1	THFILI_08280	THFILI_02345	DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649