Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
bshCHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BshC family. (492 aa)    
Predicted Functional Partners:
KGQ22993.1
Bacillithiol biosynthesis deacetylase BshB1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.879
KGQ20882.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.818
KGQ22854.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.789
mqnD
1,4-dihydroxy-6-naphthoate synthase; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.
       0.777
KGQ21490.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.763
KGQ22353.1
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.727
KGQ21924.1
LmbE-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.630
KGQ21300.2
GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.625
KIX84330.1
Deoxyhypusine synthase; Transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the deoxyhypusine synthase family.
       0.554
KGQ20880.2
Stage II sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.494
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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