Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KGQ20880.2Stage II sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)    
Predicted Functional Partners:
bshC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BshC family.
       0.494
KGQ20882.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.487
KGQ22963.1
Pyruvyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
KGQ22045.2
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.466
mqnD
1,4-dihydroxy-6-naphthoate synthase; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.
       0.464
KGQ21490.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.459
KGQ22573.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.437
mraZ
Cell division protein MraZ; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MraZ family.
      
 0.427
KGQ22950.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
     
 0.416
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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