Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KGQ21895.1Glycolate oxidase subunit GlcD; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)    
Predicted Functional Partners:
KIX84344.1
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.991
KGQ21896.1
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.984
KGQ21894.2
Malate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the malate synthase family.
  
 
 0.955
KGQ22791.2
Glycolate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.829
KIX84343.1
Glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.819
KGQ20993.1
Glyoxylate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.811
KGQ21784.1
Aminotransferase class V; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.792
KGQ20890.1
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.788
KGQ22308.1
Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family.
     
  0.788
KIX84689.1
2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.788
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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