Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGQ21020.1Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (682 aa)    
Predicted Functional Partners:
KIX84457.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.873
KIX84653.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.713
KIX84767.1
Conserved repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.710
KGQ22043.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.710
KGQ21503.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
KGQ21097.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
KGQ22293.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.623
KGQ21294.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.601
KGQ21099.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
KGQ22749.2
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.555
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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