Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KGQ22989.2Prepilin-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)    
Predicted Functional Partners:
KGQ22990.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.960
KGQ22991.2
Type IV pilin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.960
KGQ20957.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.820
KGQ20909.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.820
KGQ20911.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.820
KGQ22988.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.801
plsY-2
Hypothetical protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.554
KGQ22993.1
Bacillithiol biosynthesis deacetylase BshB1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.554
KGQ22992.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
       0.457
KGQ22994.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.457
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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