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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGQ21477.2Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)    
Predicted Functional Partners:
KGQ22555.2
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.910
KGQ22450.2
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.910
KGQ21353.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.904
trmJ
RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
       0.814
KIX84371.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
KGQ22458.2
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.774
KGQ22973.2
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.669
KGQ22433.2
Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.485
KGQ22569.2
Phosphotyrosine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.472
ychF
GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.470
Your Current Organism:
Thermus filiformis
NCBI taxonomy Id: 276
Other names: ATCC 43280, DSM 4687, JCM 11600, T. filiformis, strain Wai33 A1
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