STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
samd4bSterile alpha motif domain containing 4B. (637 aa)    
Predicted Functional Partners:
LOC114651669
Nanos homolog 1-like.
    
 
 0.629
ENSECRP00000026640
annotation not available
    
 
 0.586
ywhae
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon.
    
   0.584
golga3
Golgin A3.
      
 0.461
ENSECRP00000000957
annotation not available
    
 
 0.443
tmem63c
Transmembrane protein 63C.
      
 0.428
eif4enif1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 
 0.422
carhsp1
Calcium regulated heat stable protein 1.
    
 
 0.413
rnpc3
RNA binding region (RNP1, RRM) containing 3.
      
 0.412
edaradd
EDAR associated death domain.
    
 
 0.409
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.