STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudcd3NudC domain containing 3. (367 aa)    
Predicted Functional Partners:
LOC114650950
E3 SUMO-protein ligase RanBP2-like.
   
  0.980
ENSECRP00000007761
annotation not available
    
 0.940
dync2li1
Dynein cytoplasmic 2 light intermediate chain 1.
     
 0.938
wdr34
WD repeat domain 34.
    
 0.937
snx4
Sorting nexin 4.
    
  0.937
dynlt3
Dynein light chain Tctex-type 3.
     
 0.928
tctex1d2
Tctex1 domain containing 2.
     
 0.928
dync1li2
Dynein cytoplasmic 1 light intermediate chain 2.
   
 0.840
dync1li1
Dynein cytoplasmic 1 light intermediate chain 1.
   
 0.840
dync1i2
Dynein cytoplasmic 1 intermediate chain 2.
    
 0.832
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.