STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmbim4Transmembrane BAX inhibitor motif containing 4. (236 aa)    
Predicted Functional Partners:
lemd3
LEM domain containing 3.
      
 0.545
sigmar1
Sigma non-opioid intracellular receptor 1.
      
 0.495
tmem147
Transmembrane protein 147.
   
  
 0.450
tmem97
Transmembrane protein 97.
      
 0.428
rcn2
Reticulocalbin 2.
      
 0.428
ghitm
Growth hormone inducible transmembrane protein.
   
  
 0.421
rad54l2
RAD54 like 2.
     
 0.417
irak3
Interleukin 1 receptor associated kinase 3.
     
 0.413
tacc3
Transforming acidic coiled-coil containing protein 3.
      
 0.403
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.