STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rufy2RUN and FYVE domain containing 2. (696 aa)    
Predicted Functional Partners:
wdfy4
WDFY family member 4.
   
 
 0.849
uvrag
UV radiation resistance associated.
    
 0.828
LOC114647098
Ras-related protein Rab-4B.
    
  0.705
ENSECRP00000033480
annotation not available
    
  
0.573
pbld
Phenazine biosynthesis like protein domain containing.
 
    
 0.548
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.515
rab33a
RAB33A, member RAS oncogene family.
    
 
 0.506
plekhm1
Pleckstrin homology and RUN domain containing M1.
     
 0.486
becn1
Beclin 1.
    
 
 0.481
rufy3
RUN and FYVE domain containing 3.
  
 
  
0.465
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.