STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syngap1Synaptic Ras GTPase activating protein 1. (1434 aa)    
Predicted Functional Partners:
mras
Muscle RAS oncogene homolog.
    
 0.793
arhgap35
Rho GTPase activating protein 35.
    
 0.771
arhgap5
Rho GTPase activating protein 5.
    
 0.771
map3k5
Mitogen-activated protein kinase kinase kinase 5.
    
 0.747
ern1
Endoplasmic reticulum to nucleus signaling 1.
    
  0.747
map3k6
Mitogen-activated protein kinase kinase kinase 6.
    
 0.747
rasa1
RAS p21 protein activator 1.
     
0.742
rras2
RAS related 2.
    
 0.739
LOC114660716
Ras-related protein R-Ras2-like.
    
 0.739
rasa3
RAS p21 protein activator 3.
    
0.709
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.