Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tacr2Tachykinin receptor 2. (376 aa)    
Predicted Functional Partners:
tac1
Tachykinin precursor 1.
    
 0.983
LOC114652196
Guanine nucleotide-binding protein G(q) subunit alpha.
    
 0.907
LOC114652197
Guanine nucleotide-binding protein subunit alpha-14-like.
    
 0.907
LOC114662752
Guanine nucleotide-binding protein subunit alpha-11.
    
 0.907
LOC114662751
Guanine nucleotide-binding protein subunit alpha-11-like.
    
  0.902
sdhaf3
Succinate dehydrogenase complex assembly factor 3.
    
 0.738
znf830
Zinc finger protein 830.
     
  0.664
itsn2
Intersectin 2.
     
  0.621
gnb2
G protein subunit beta 2.
    
 0.593
LOC114646404
Guanine nucleotide-binding protein subunit beta-4.
    
 0.593
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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