STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000001075annotation not available (279 aa)    
Predicted Functional Partners:
trip13
Thyroid hormone receptor interactor 13.
   
 
 0.961
dmc1
DNA meiotic recombinase 1.
   
 
 0.940
ENSECRP00000014928
annotation not available
      
 0.882
spo11
SPO11 initiator of meiotic double stranded breaks.
   
  
 0.819
knl1
Kinetochore scaffold 1.
   
 
 0.779
rad51c
RAD51 paralog C.
   
 
 0.779
ENSECRP00000003094
annotation not available
    
 
 0.766
ENSECRP00000005629
annotation not available
   
  
 0.755
smc3
Structural maintenance of chromosomes 3.
    
 
 0.741
ENSECRP00000028805
annotation not available
      
 0.727
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.