STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmt61btRNA methyltransferase 61B. (510 aa)    
Predicted Functional Partners:
trmt6
tRNA methyltransferase 6.
   
 0.998
mettl1
Methyltransferase like 1.
  
 0.990
wdr4
WD repeat domain 4.
   
 
 0.988
trmt11
tRNA methyltransferase 11 homolog.
   
 
 0.978
trmt10c
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.973
trmt61a
tRNA methyltransferase 61A.
  
  
0.972
bud23
BUD23 rRNA methyltransferase and ribosome maturation factor.
  
 0.969
ENSECRP00000009689
annotation not available
   
 
 0.964
hsd17b10
Hydroxysteroid 17-beta dehydrogenase 10.
    
 0.935
mettl27
Methyltransferase like 27.
  
 0.879
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.