Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hnrnpuHeterogeneous nuclear ribonucleoprotein U. (826 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.988
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.962
LOC114645737
Heterogeneous nuclear ribonucleoprotein C-like.
   
 0.951
hnrnpa1
Heterogeneous nuclear ribonucleoprotein A1.
   
 0.946
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
   
 0.937
rbmx
RNA binding motif protein X-linked.
   
 0.901
ENSECRP00000019964
annotation not available
   
 0.901
polr2a
RNA polymerase II subunit A.
   
 0.892
srsf9
Serine and arginine rich splicing factor 9.
   
 0.877
ewsr1
EWS RNA binding protein 1.
   
 0.866
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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