STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
armc2Armadillo repeat containing 2. (852 aa)    
Predicted Functional Partners:
wdr63
WD repeat domain 63.
      
 0.879
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.752
ENSECRP00000022943
annotation not available
   
 0.752
cep78
Centrosomal protein 78.
      
 0.729
ttc21a
Tetratricopeptide repeat domain 21A.
      
 0.715
ttc29
Tetratricopeptide repeat domain 29.
      
 0.713
cfap58
Cilia and flagella associated protein 58.
      
 0.693
ENSECRP00000003739
annotation not available
   
 
 0.678
afdn
Afadin, adherens junction formation factor.
     
 0.664
cdt1
Chromatin licensing and DNA replication factor 1.
      
 0.658
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.