STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epm2aEPM2A glucan phosphatase, laforin. (317 aa)    
Predicted Functional Partners:
ENSECRP00000018286
annotation not available
    
 0.929
stbd1
Starch binding domain 1.
    
 
 0.785
magi3
Membrane associated guanylate kinase, WW and PDZ domain containing 3.
    
 0.711
ube2v1
Ubiquitin conjugating enzyme E2 V1.
     
 0.710
LOC114660582
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like.
    
 0.688
inppl1
Inositol polyphosphate phosphatase like 1.
   
 
 0.662
LOC114662388
Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2B-like.
   
 
 0.662
nfu1
NFU1 iron-sulfur cluster scaffold.
   
 
 0.594
LOC114649212
MOB kinase activator 1A.
    
 0.585
ENSECRP00000007801
annotation not available
    
 0.585
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.