STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000001262annotation not available (167 aa)    
Predicted Functional Partners:
hmgb1
High mobility group box 1.
    
  0.498
hmgb2
High mobility group box 2.
    
  0.498
hmgb3
High mobility group box 3.
    
  0.498
cdk5
Cyclin dependent kinase 5.
    
  0.476
LOC114648650
Histone H2A.V.
   
 
 0.467
LOC114654554
Histone H2A.Z.
   
 
 0.467
noc2l
NOC2 like nucleolar associated transcriptional repressor.
    
   0.464
LOC114661412
Histone H1.0-like.
   
 0.458
ENSECRP00000013564
annotation not available
     
 0.452
stn1
STN1 subunit of CST complex.
    
  0.449
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.