Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clk2CDC like kinase 2. (517 aa)    
Predicted Functional Partners:
ppp2r5b
Protein phosphatase 2 regulatory subunit B'beta.
     
  0.857
ppp2r5e
Protein phosphatase 2 regulatory subunit B'epsilon.
     
  0.857
ppp2r5a
Protein phosphatase 2 regulatory subunit B'alpha.
     
  0.857
ENSECRP00000025098
annotation not available
 
 
 
 0.823
ppp2r1b
Protein phosphatase 2 scaffold subunit Abeta.
     
  0.815
ppp2r1a
Protein phosphatase 2 scaffold subunit Aalpha.
     
  0.815
ENSECRP00000022631
annotation not available
   
 
 0.795
srsf1
Serine and arginine rich splicing factor 1.
    
 
 0.775
LOC114665454
Serine/arginine-rich splicing factor 10-like.
   
 
 0.760
ythdc1
YTH domain containing 1.
   
 
 0.727
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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