STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bet1lBet1 golgi vesicular membrane trafficking protein like. (111 aa)    
Predicted Functional Partners:
stx5
Syntaxin 5.
   
 0.990
gosr1
Golgi SNAP receptor complex member 1.
    
 0.987
ykt6
YKT6 v-SNARE homolog.
    
 0.984
gosr2
Golgi SNAP receptor complex member 2.
   
 0.979
uso1
USO1 vesicle transport factor.
    
 0.977
scfd1
Sec1 family domain containing 1.
   
 0.957
sec22b
SEC22 homolog B, vesicle trafficking protein.
    
 0.946
stx17
Syntaxin 17.
   
 0.929
stx18
Syntaxin 18.
   
 0.926
LOC114651656
Vesicle-trafficking protein SEC22b-like.
    
 0.920
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.