STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c5h9orf64Chromosome 5 C9orf64 homolog. (357 aa)    
Predicted Functional Partners:
qtrt1
Queuine tRNA-ribosyltransferase catalytic subunit 1.
     
 0.604
rnaseh2a
Ribonuclease H2 subunit A.
   
    0.570
mcts1
MCTS1 re-initiation and release factor.
 
      0.563
prim1
DNA primase subunit 1.
   
    0.451
ciao2a
Cytosolic iron-sulfur assembly component 2A.
      
 0.436
prim2
DNA primase subunit 2.
   
    0.431
ENSECRP00000015656
annotation not available
   
    0.414
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.