STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114668070Histone H4. (103 aa)    
Predicted Functional Partners:
arid4a
AT-rich interaction domain 4A.
    
 0.789
arid4b
AT-rich interaction domain 4B.
    
 0.789
hat1
Histone acetyltransferase 1.
    
 0.781
rps27a
Ribosomal protein S27a.
   
 0.710
polr2e
RNA polymerase II subunit E.
    
  0.693
polr2k
RNA polymerase II subunit K.
    
  0.683
polr2l
RNA polymerase II subunit L.
    
  0.676
rbbp4
RB binding protein 4, chromatin remodeling factor.
    
 0.673
LOC114641485
Histone-binding protein RBBP7.
    
 0.673
orc1
Origin recognition complex subunit 1.
    
 0.665
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.