Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
loxl4Lysyl oxidase like 4. (761 aa)    
Predicted Functional Partners:
dhx15
DEAH-box helicase 15.
    
  0.830
eln
Elastin.
    
 0.670
smpd3
Sphingomyelin phosphodiesterase 3.
      
 0.600
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.536
arid4a
AT-rich interaction domain 4A.
    
 0.524
arid4b
AT-rich interaction domain 4B.
    
 0.524
frem1
FRAS1 related extracellular matrix 1.
    
 0.521
LOC114659815
FRAS1-related extracellular matrix protein 1-like.
    
 0.521
ENSECRP00000022527
annotation not available
    
 0.521
ENSECRP00000030381
annotation not available
    
 0.521
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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