Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
psmd13Proteasome 26S subunit, non-ATPase 13. (407 aa)    
Predicted Functional Partners:
psmc2
Proteasome 26S subunit, ATPase 2.
   
 0.999
ENSECRP00000005387
annotation not available
   
 0.999
psmd1
Proteasome 26S subunit, non-ATPase 1.
   
 0.999
psmd2
Proteasome 26S subunit, non-ATPase 2.
   
 0.999
usp14
Ubiquitin specific peptidase 14.
   
 0.999
ENSECRP00000009890
annotation not available
   
 0.999
psmd14
Proteasome 26S subunit, non-ATPase 14.
   
 0.999
psmb2
Proteasome 20S subunit beta 2.
   
 0.999
psmc6
Proteasome 26S subunit, ATPase 6.
   
 0.999
psmc1
Proteasome 26S subunit, ATPase 1.
   
 0.999
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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